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Gefilterde resultaten
118 repositories gevonden
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juno-population
Juno-Population -
clcbioformatter
Re-formatting Fasta headers to fit CLC bio. Requested by the AMR group.
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containers
Creating and uploading containers to ghcr
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ATdatabase
AT-DATABASE -
samanapir
Package for Samen Analyseren Tool
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juno-blast
Automated BLASTing from fasta files.
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ids_bacteriology_man
Code for the website used for documenting bacteriology pipelines (tailor made for RIVM people). Written in R (bookdown)
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refsampr
Internal R package (for RIVM) for making quality control reports of reference samples. Different assembly metrics are followed up and plotted over time.
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KRWQCprotocol
KRWQCprotocol - R package voor QC controle -
VirASM
VirASM is a quick and minimal pipeline to assemble metagenomics/viromics samples from illumina data
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Juno_pipeline_ion
Pipeline to process raw sequencing data up to de-novo assembly and the accompanying statistics(iontorrent edition)
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KRWTrends
KRWTrends -
wgs_identification
Ramon WGS project pipeline
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Juno-seroba
Pipeline for serotyping Streptococcus pneumoniae (to be merged in Juno-typing).
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Myco_lofreq
Pipeline to call minority variants in Mycobacterium samples
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achtergrondwaarden
In Dutch soil policy the concept of background threshold concentrations is based on percentile values of soil measurements. This package contains functions to obtain such values, including confidence intervals.
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aerius-connect-examples
Voorbeelden van het gebruik van de AERIUS connect API